PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000219488
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 199aa    MW: 23276.7 Da    PI: 6.5255
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000219488genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.92.2e-41181332128
            NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    +pGfrFhPtdeelv +yLk+k+ +kkl++ +vi+e+d+yk++P++Lp+   +k+++++w+fFs+rd+ky+ g r++rat++g Wk tgkd++++  
  MDP0000219488  18 TPGFRFHPTDEELVLYYLKRKICKKKLKI-DVIAETDVYKWDPEELPElsPLKTGDRQWFFFSPRDRKYPXGXRSSRATRHGXWKXTGKDRTIT-- 110
                    69***************************.99**************9445778899***********************************995.. PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              L +ykgrap+ge+tdWvmhey+l
  MDP0000219488 111 ----------LXYYKGRAPSGERTDWVMHEYTL 133
                    ..........69*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5012156IPR003441NAC domain
PROSITE profilePS5100533.42417156IPR003441NAC domain
PfamPF023653.7E-2219133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MMTEDDSAAL FCDGHFATPG FRFHPTDEEL VLYYLKRKIC KKKLKIDVIA ETDVYKWDPE  60
ELPELSPLKT GDRQWFFFSP RDRKYPXGXR SSRATRHGXW KXTGKDRTIT LXYYKGRAPS  120
GERTDWVMHE YTLXEEELKR CENVQQYYAL YKVFQKSGPG PKNGEQYGAP FSEEDWVDDE  180
SPVIKTAADR QISVKQAVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-381913317140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.150563e-57bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339761.11e-127PREDICTED: uncharacterized protein LOC103931956
SwissprotQ9XIC52e-89NAC17_ARATH; NAC domain-containing protein 17
TrEMBLM5W6F51e-114M5W6F5_PRUPE; Uncharacterized protein
STRINGSolyc04g072220.2.19e-94(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.18e-78NAC domain containing protein 17